DatabaseURLDescriptions
AffymetrixNoneAffymetrix Probe ID
AGDhttp://agd.vital-it.ch/Ashbya genome database
Aarhus/Ghent-2DPAGENoneHuman keratinocyte 2D gel protein database from Aarhus and Ghent universities
ArachnoServerhttp://www.arachnoserver.orgSpider toxin database
BioCychttp://www.biocyc.org/BioCyc Collection of Pathway/Genome Databases
CGDhttp://www.candidagenome.org/Candida Genome Database
CYGDhttp://mips.gsf.de/genre/proj/yeastComprehensive Yeast Genome Database
CleanExhttp://www.cleanex.isb-sib.ch/CleanEx database of gene expression profiles
ConoServerhttp://www.conoserver.org/Cone snail toxin database
DIPhttp://dip.doe-mbi.ucla.edu/Database of interacting proteins
DisProthttp://www.disprot.org/Database of protein disorder
DrugBankhttp://www.drugbank.ca/Drug and drug target database
EMBLhttp://www.ebi.ac.uk/ena/EMBL nucleotide sequence database
EchoBASEhttp://www.york.ac.uk/res/thomas/EchoBASE - an integrated post-genomic database for E. coli
EcoGenehttp://www.ecogene.org/Escherichia coli strain K12 genome database
Ensemblhttp://www.ensembl.org/Ensembl eukaryotic genome annotation project
Ensembl_PROhttp://www.ensembl.org/Ensembl eukaryotic genome annotation project
Ensembl_TRShttp://www.ensembl.org/Ensembl eukaryotic genome annotation project
EnsemblGenomehttp://www.ensembl.org/Extending Ensembl across the taxonomic space
EnsemblGenome_PROhttp://www.ensembl.org/Extending Ensembl across the taxonomic space
EnsemblGenome_TRShttp://www.ensembl.org/Extending Ensembl across the taxonomic space
EuPathDBhttp://www.eupathdb.org/Eukaryotic Pathogen Database Resources
FlyBasehttp://flybase.org/Drosophila genome database
GIhttp://www.ncbi.nlm.nih.gov/NCBI GI number
GeneCardshttp://www.genecards.org/GeneCards: human genes, protein and diseases
GeneFarmhttp://urgi.versailles.inra.fr/Genefarm/index.htplStructural and functional annotation of Arabidopsis thaliana gene and protein families
GeneIDhttp://www.ncbi.nlm.nih.gov/sites/entrez?db=geneDatabase of genes from NCBI RefSeq genomes
GenoListhttp://genodb.pasteur.fr/cgi-bin/WebObjects/GenoList.woa/GenoList Integrated Environment for the Analysis of Microbial Genomes
GenomeReviewshttp://www.ebi.ac.uk/GenomeReviews/Genome Reviews; an annotated view of completely sequenced genomes
GermOnlinehttp://www.germonline.org/GermOnline - a gateway for gametogenesis
H-InvDBhttp://www.h-invitational.jp/H-Invitational Database, human transcriptome db
HGNChttp://www.genenames.org/Human Gene Nomenclature Database
HOGENOMhttp://pbil.univ-lyon1.fr/databases/hogenom.phpThe HOGENOM Database of Homologous Genes from Fully Sequenced Organisms
HOVERGENhttp://pbil.univ-lyon1.fr/databases/hovergen.htmlThe HOVERGEN Database of Homologous Vertebrate Genes
HPAhttp://www.proteinatlas.org/Human Protein Atlas
HSSPhttp://swift.cmbi.kun.nl/swift/hssp/Homology-derived secondary structure of proteins database
IPIhttp://www.ebi.ac.uk/IPIInternational Protein Index
KEGGhttp://www.genome.jp/kegg/KEGG: Kyoto Encyclopedia of Genes and Genomes
LegioListhttp://genolist.pasteur.fr/LegioList/Legionella pneumophila genome database
Lepromahttp://mycobrowser.epfl.ch/leprosy.htmlMycobacterium leprae genome database
MEROPShttp://merops.sanger.ac.uk/MEROPS protease database
MGIhttp://www.informatics.jax.org/Mouse genome database (MGD) from Mouse Genome Informatics (MGI)
MIMhttp://www.omim.org/Online Mendelian Inheritance in Man (OMIM)
MINThttp://mint.bio.uniroma2.it/mint/Molecular INTeraction database
MaizeGDBhttp://www.maizegdb.org/Maize Genetics and Genomics Database
NCBI_taxhttp://www.ncbi.nlm.nih.gov/taxonomyNCBI Taxonomy
NextBiohttp://www.nextbio.com/NextBio gene-centric data for human, mouse, rat, fly, worm and yeast
OMAhttp://www.omabrowser.orgIdentification of Orthologs from Complete Genome Data
Orphanethttp://www.orpha.net/consor/cgi-bin/home.php?Lng=GBOrphanet; a database dedicated to information on rare diseases and orphan drugs
OrthoDBhttp://cegg.unige.ch/orthodbDatabase of Orthologous Groups
PDBhttp://www.ebi.ac.uk/pdbe/Protein Data Bank Europe
PeroxiBasehttp://peroxibase.toulouse.inra.fr/PeroxiBase, a peroxidase database
PharmGKBhttp://www.pharmgkb.orgThe Pharmacogenetics and Pharmacogenomics Knowledge Base
PptaseDBhttp://www.phosphatase.biochem.vt.eduProkaryotic Protein Phosphatase Database
ProtClustDBhttp://www.ncbi.nlm.nih.gov/sites/entrez?db=proteinclustersEntrez Protein Clusters
PseudoCAPhttp://www.pseudomonas.com/Pseudomonas genome database
REBASEhttp://rebase.neb.com/Restriction enzymes and methylases database
RGDhttp://rgd.mcw.edu/Rat genome database
Reactomehttp://www.reactome.org/Reactome - a knowledgebase of biological pathways and processes
RefSeqhttp://www.ncbi.nlm.nih.gov/RefSeq/NCBI Reference Sequences
SGDhttp://www.yeastgenome.org/Saccharomyces Genome Database
TAIRhttp://www.arabidopsis.org/The Arabidopsis Information Resource
TCDBhttp://www.tcdb.org/Transport Classification Database
TubercuListhttp://tuberculist.epfl.chMycobacterium tuberculosis strain H37Rv genome database
UCSChttp://genome.ucsc.eduUCSC genome browser
UniGenehttp://www.ncbi.nlm.nih.gov/sites/entrez?db=UniGeneUniGene gene-oriented nucleotide sequence clusters
UniParchttp://www.uniprot.org/uniparc/Non-redundant archive of protein sequences
UniProtKB-IDhttp://www.uniprot.org/Comprehensive resourece for protein sequence and annotation data
UniRef100http://www.uniprot.org/uniref/UniProt Reference Clusters database
UniRef50http://www.uniprot.org/uniref/UniProt Reference Clusters database
UniRef90http://www.uniprot.org/uniref/UniProt Reference Clusters database
VectorBasehttp://www.vectorbase.org/Invertebrate Vectors of Human Pathogens
World-2DPAGEhttp://world-2dpage.expasy.org/repository/The World-2DPAGE database
WormBasehttp://www.wormbase.org/Data bases on the genetics of C elegans and related nematodes
WormBase_PROhttp://www.wormbase.org/Data bases on the genetics of C elegans and related nematodes
WormBase_TRShttp://www.wormbase.org/Data bases on the genetics of C elegans and related nematodes
Xenbasehttp://www.xenbase.org/Xenopus laevis and tropicalis biology and genomics resource
ZFINhttp://zfin.org/Zebrafish Information Network genome database
dictyBasehttp://dictybase.org/Dictyostelium discoideum online informatics resource
eggNOGhttp://eggnog.embl.de/evolutionary genealogy of genes: Non-supervised Orthologous Groups
euHCVdbhttp://euhcvdb.ibcp.fr/euHCVdb/European Hepatitis C Virus database