DatabaseURLDescriptions
AGDhttp://agd.vital-it.ch/Ashbya genome database
ArachnoServerhttp://www.arachnoserver.org/Spider toxin database
ArrayExpresshttp://www.ebi.ac.uk/arrayexpress/ArrayExpress repository for microarray data
BioCychttp://www.biocyc.org/BioCyc Collection of Pathway/Genome Databases
BioGRIDhttp://thebiogrid.org/Online interaction repository with data compiled through comprehensive curation efforts
CGDhttp://www.candidagenome.org/Candida Genome Database
COGhttp://www.ncbi.nlm.nih.gov/COG/Phylogenetic classification of proteins encoded in complete genomes
COXPRESdbhttp://coxpresdb.jp/Co-regulated gene relationships to estimate gene functions
CYGDhttp://mips.gsf.de/genre/proj/yeastComprehensive Yeast Genome Database
CleanExhttp://www.cleanex.isb-sib.ch/CleanEx database of gene expression profiles
ConoServerhttp://www.conoserver.org/Cone snail toxin database
DIPhttp://dip.doe-mbi.ucla.edu/Database of interacting proteins
DOIhttp://www.doi.org/Persistent interoperable identifiers for use on digital networks
DisProthttp://www.disprot.org/Database of protein disorder
DrugBankhttp://www.drugbank.ca/Drug and drug target database
EC_numberhttp://www.genome.jp/dbget-bin/www_bfind?enzymeEnzyme Commission numbers
EMBLhttp://www.ebi.ac.uk/ena/EMBL nucleotide sequence database
ENZYMEhttp://enzyme.expasy.org/Enzyme nomenclature database
EchoBASEhttp://www.york.ac.uk/res/thomas/EchoBASE - an integrated post-genomic database for E. coli
EcoGenehttp://www.ecogene.org/Escherichia coli strain K12 genome database
Ensemblhttp://www.ensembl.org/Ensembl eukaryotic genome annotation project
Ensembl_PROhttp://www.ensembl.org/Ensembl eukaryotic genome annotation project
Ensembl_TRShttp://www.ensembl.org/Ensembl eukaryotic genome annotation project
EnsemblBacteriahttp://bacteria.ensembl.org/Extending Ensembl across the bacteria genomes
EnsemblGenomehttp://www.ensembl.org/Extending Ensembl across the taxonomic space
EnsemblGenome_PROhttp://www.ensembl.org/Extending Ensembl across the taxonomic space
EnsemblGenome_TRShttp://www.ensembl.org/Extending Ensembl across the taxonomic space
EuPathDBhttp://www.eupathdb.org/Eukaryotic Pathogen Database Resources
FlyBasehttp://flybase.org/Drosophila genome database
G-Linkshttp://link.g-language.org/A rapid data "broker" service that collects and adds related information to a given gene (or gene set)
GIhttp://www.ncbi.nlm.nih.gov/NCBI GI number
GO_componenthttp://amigo.geneontology.org/A controlled vocabulary of terms for describing gene product characteristics (Celluar component)
GO_functionhttp://amigo.geneontology.org/A controlled vocabulary of terms for describing gene product characteristics (Molecular function)
GO_processhttp://amigo.geneontology.org/A controlled vocabulary of terms for describing gene product characteristics (Biological process)
GOslim_componenthttp://amigo.geneontology.org/Cut-down version of the gene ontologies (Celluar component)
GOslim_functionhttp://amigo.geneontology.org/Cut-down version of the gene ontologies (Molecular function)
GOslim_processhttp://amigo.geneontology.org/Cut-down version of the gene ontologies (Biological process)
Gene3Dhttp://gene3d.biochem.ucl.ac.uk/Gene3D/Gene3D Structural and Functional Annotation of Protein Families
GeneCardshttp://www.genecards.org/GeneCards: human genes, protein and diseases
GeneFarmhttp://urgi.versailles.inra.fr/Genefarm/index.htplStructural and functional annotation of Arabidopsis thaliana gene and protein families
GeneIDhttp://www.ncbi.nlm.nih.gov/sites/entrez?db=geneDatabase of genes from NCBI RefSeq genomes
GeneTreehttp://www.ensemblgenomes.orgGeneTree
Genevestigatorhttp://www.genevestigator.comGenevestigator
GenoListhttp://genodb.pasteur.fr/cgi-bin/WebObjects/GenoList.woa/GenoList Integrated Environment for the Analysis of Microbial Genomes
GenomeReviewshttp://www.ebi.ac.uk/GenomeReviews/Genome Reviews; an annotated view of completely sequenced genomes
GermOnlinehttp://www.germonline.org/GermOnline - a gateway for gametogenesis
H-InvDBhttp://www.h-invitational.jp/H-Invitational Database, human transcriptome db
HAMAPhttp://hamap.expasy.org/HAMAP database of protein families
HGNChttp://www.genenames.org/Human Gene Nomenclature Database
HOGENOMhttp://pbil.univ-lyon1.fr/databases/hogenom.phpThe HOGENOM Database of Homologous Genes from Fully Sequenced Organisms
HOVERGENhttp://pbil.univ-lyon1.fr/databases/hovergen.htmlThe HOVERGEN Database of Homologous Vertebrate Genes
HPAhttp://www.proteinatlas.org/Human Protein Atlas
HSSPhttp://swift.cmbi.kun.nl/swift/hssp/Homology-derived secondary structure of proteins database
IPIhttp://www.ebi.ac.uk/IPIInternational Protein Index
InParanoidhttp://inparanoid.sbc.su.se/InParanoid: Eukaryotic Ortholog Groups
IntActhttp://www.ebi.ac.uk/intact/Protein interaction database and analysis system
IntEnzhttp://www.ebi.ac.uk/intenz/Integrated relational Enzyme database
InterProhttp://www.ebi.ac.uk/interpro/Integrated resource of protein families, domains and functional sites
Jabionhttp://www.bioportal.jp/ja/Japanese biotechnology portal site
KEGG_Britehttp://www.genome.jp/kegg/brite.htmlFunctional hierarchies and binary relationships of biological entities
KEGG_Diseasehttp://www.genome.jp/kegg/disease/Disease viewed as perturbed states of the molecular system
KEGG_Genehttp://www.genome.jp/kegg/genes.htmlMolecular building blocks of life in the genomic space
KEGG_Orthologyhttp://www.genome.jp/kegg/ko.htmlLinking genomes to pathways by ortholog annotation
KEGG_Pathwayhttp://www.genome.jp/kegg/pathway.htmlWiring diagrams of molecular interactions, reactions, and relations
KEGG_Reactionhttp://www.genome.jp/kegg/reaction/Knowledge base for predicting biodegradation and biosynthesis
LegioListhttp://genolist.pasteur.fr/LegioList/Legionella pneumophila genome database
Lepromahttp://mycobrowser.epfl.ch/leprosy.htmlMycobacterium leprae genome database
MGIhttp://www.informatics.jax.org/Mouse genome database (MGD) from Mouse Genome Informatics (MGI)
MIMhttp://www.omim.org/Online Mendelian Inheritance in Man (OMIM)
MINThttp://mint.bio.uniroma2.it/mint/Molecular INTeraction database
MaizeGDBhttp://www.maizegdb.org/Maize Genetics and Genomics Database
NextBiohttp://www.nextbio.com/NextBio gene-centric data for human, mouse, rat, fly, worm and yeast
OMAhttp://www.omabrowser.orgIdentification of Orthologs from Complete Genome Data
Orphanethttp://www.orpha.net/consor/cgi-bin/home.php?Lng=GBOrphanet; a database dedicated to information on rare diseases and orphan drugs
OrthoDBhttp://cegg.unige.ch/orthodbDatabase of Orthologous Groups
PANTHERhttp://www.pantherdb.org/The PANTHER Classification System
PDBhttp://www.ebi.ac.uk/pdbe/Protein Data Bank Europe
PDBsumhttp://www.ebi.ac.uk/pdbsum/PDBsum; at-a-glance overview of macromolecular structures
PIDhttp://pid.nci.nih.gov/Pathway Interaction Database : Biomolecular interactions and cellular processes assembled into authoritative human signaling pathways
PRINTShttp://umber.sbs.man.ac.uk/dbbrowser/PRINTS/Protein Motif fingerprint database; a protein domain database
PROSITEhttp://prosite.expasy.org/PROSITE; a protein domain and family database
PeroxiBasehttp://peroxibase.toulouse.inra.fr/PeroxiBase, a peroxidase database
Pfamhttp://pfam.sanger.ac.uk/Pfam protein domain database
PharmGKBhttp://www.pharmgkb.orgThe Pharmacogenetics and Pharmacogenomics Knowledge Base
PhosSitehttp://www.phosphorylation.biochem.vt.edu/Phosphorylation site database for Archaea and Bacteria
PhosphoSitehttp://www.phosphosite.orgPhosphorylation site database
PhylomeDBhttp://phylomedb.org/Database for complete collections of gene phylogenies
PomBasehttp://www.pombase.org/Schizosaccharomyces pombe database
PptaseDBhttp://www.phosphatase.biochem.vt.eduProkaryotic Protein Phosphatase Database
ProtClustDBhttp://www.ncbi.nlm.nih.gov/sites/entrez?db=proteinclustersEntrez Protein Clusters
ProteinModelPortalhttp://www.proteinmodelportal.org/Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase
PseudoCAPhttp://www.pseudomonas.com/Pseudomonas genome database
PubMedhttp://www.ncbi.nlm.nih.gov/pubmedBiomedical literature from MEDLINE, lifescience journals and online books
REBASEhttp://rebase.neb.com/Restriction enzymes and methylases database
RGDhttp://rgd.mcw.edu/Rat genome database
Reactomehttp://www.reactome.org/Reactome - a knowledgebase of biological pathways and processes
RefSeqhttp://www.ncbi.nlm.nih.gov/RefSeq/NCBI Reference Sequences
SGDhttp://www.yeastgenome.org/Saccharomyces Genome Database
SMARThttp://smart.embl.de/Simple Modular Architecture Research Tool; a protein domain database
SMRhttp://swissmodel.expasy.org/repository/SWISS-MODEL Repository - a database of annotated 3D protein structure models
SNPediahttp://www.snpedia.com/wiki investigating human genetics
STRINGhttp://string-db.orgSTRING: functional protein association networks
SUPFAMhttp://supfam.orgSuperfamily database of structural and functional annotation
SWISS-2DPAGEhttp://world-2dpage.expasy.org/swiss-2dpage/Two-dimensional polyacrylamide gel electrophoresis database from the Geneva University Hospital
SignalingGatewayhttp://www.signaling-gateway.org/molecule/Essential thousands of proteins information on over involved in cellular signaling
TAIRhttp://www.arabidopsis.org/The Arabidopsis Information Resource
TCDBhttp://www.tcdb.org/Transport Classification Database
TIGRFAMshttp://www.jcvi.org/cms/research/projects/tigrfams/overview/TIGRFAMs; a protein family database
TubercuListhttp://tuberculist.epfl.chMycobacterium tuberculosis strain H37Rv genome database
UCSChttp://genome.ucsc.eduUCSC genome browser
UniGenehttp://www.ncbi.nlm.nih.gov/sites/entrez?db=UniGeneUniGene gene-oriented nucleotide sequence clusters
UniParchttp://www.uniprot.org/uniparc/Non-redundant archive of protein sequences
UniProtKBhttp://www.uniprot.org/Comprehensive resourece for protein sequence and annotation data
UniProtKB-AChttp://www.uniprot.org/UniProt accession number
UniRef100http://www.uniprot.org/uniref/UniProt Reference Clusters database
UniRef50http://www.uniprot.org/uniref/UniProt Reference Clusters database
UniRef90http://www.uniprot.org/uniref/UniProt Reference Clusters database
VectorBasehttp://www.vectorbase.org/Invertebrate Vectors of Human Pathogens
World-2DPAGEhttp://world-2dpage.expasy.org/repository/The World-2DPAGE database
WormBasehttp://www.wormbase.org/Data bases on the genetics of C elegans and related nematodes
WormBase_PROhttp://www.wormbase.org/Data bases on the genetics of C elegans and related nematodes
WormBase_TRShttp://www.wormbase.org/Data bases on the genetics of C elegans and related nematodes
Xenbasehttp://www.xenbase.org/Xenopus laevis and tropicalis biology and genomics resource
ZFINhttp://zfin.org/Zebrafish Information Network genome database
dbSNPhttp://www.ncbi.nlm.nih.gov/SNP/Database of single nucleotide polymorphism
dictyBasehttp://dictybase.org/Dictyostelium discoideum online informatics resource
eggNOGhttp://eggnog.embl.de/evolutionary genealogy of genes: Non-supervised Orthologous Groups
euHCVdbhttp://euhcvdb.ibcp.fr/euHCVdb/European Hepatitis C Virus database
neXtProthttp://www.nextprot.org/neXtProt; the human protein knowledge platform
antigenichttp://www.g-language.org/wiki/embossFind antigenic sites in proteins
bananahttp://www.g-language.org/wiki/embossPlot bending and curvature data for B-DNA
BLASThttp://www.g-language.org/wiki/embossSearch similar sequences in public repositories using BLAST
chaoshttp://www.g-language.org/wiki/embossDraw a chaos game representation plot for a nucleotide sequence
chargehttp://www.g-language.org/wiki/embossDraw a protein charge plot
danhttp://www.g-language.org/wiki/embossCalculate nucleic acid melting temperature
densityhttp://www.g-language.org/wiki/embossDraw a nucleic acid density plot
einvertedhttp://www.g-language.org/wiki/embossFind inverted repeats in nucleotide sequences
epestfindhttp://www.g-language.org/wiki/embossFind PEST motifs as potential proteolytic cleavage sites
equicktandemhttp://www.g-language.org/wiki/embossFind tandem repeats in nucleotide sequences
garnierhttp://www.g-language.org/wiki/embossPredict protein secondary structure using GOR method
geeceehttp://www.g-language.org/wiki/embossCalculate fractional GC content of nucleic acid sequences
helixturnhelixhttp://www.g-language.org/wiki/embossIdentify nucleic acid-binding motifs in protein sequences
hmomenthttp://www.g-language.org/wiki/embossCalculate and plot hydrophobic moment for protein sequence(s)
iephttp://www.g-language.org/wiki/embossCalculate the isoelectric point of proteins
inforesiduehttp://www.g-language.org/wiki/embossReturn information on a given amino acid residue
isochorehttp://www.g-language.org/wiki/embossPlot isochores in DNA sequences
octanolhttp://www.g-language.org/wiki/embossDraw a White-Wimley protein hydropathy plot
palindromehttp://www.g-language.org/wiki/embossFind inverted repeats in nucleotide sequence(s)
pepcoilhttp://www.g-language.org/wiki/embossPredict coiled coil regions in protein sequences
pepdigesthttp://www.g-language.org/wiki/embossReport on protein proteolytic enzyme or reagent cleavage sites
pepinfohttp://www.g-language.org/wiki/embossPlot amino acid properties of a protein sequence in parallel
pepnethttp://www.g-language.org/wiki/embossDraw a helical net for a protein sequence
pepstatshttp://www.g-language.org/wiki/embossCalculate statistics of protein properties
pepwheelhttp://www.g-language.org/wiki/embossDraw a helical wheel diagram for a protein sequence
pepwindowhttp://www.g-language.org/wiki/embossDraw a hydropathy plot for a protein sequence
Phobiushttp://www.g-language.org/wiki/embossPredicts transmembrance topology and signal peptides using Phobius
prettyseqhttp://www.g-language.org/wiki/embossWrite a nucleotide sequence and its translation to file
PSORThttp://www.g-language.org/wiki/embossPredicts protein localization for PSORT
PSORT-Bhttp://www.g-language.org/wiki/embossPredicts protein localization for PSORT B
PSORT2http://www.g-language.org/wiki/embossPredicts protein localization for PSORT2
sigcleavehttp://www.g-language.org/wiki/embossReport on signal cleavage sites in a protein sequence
WoLFPSORThttp://www.g-language.org/wiki/embossPredicts protein localization for WoLF PSORT